Cream the butter, brown sugar, and granulated sugar with an electric mixture until light and creamy. about 2 minutes. Add the eggs and vanilla and continue to beat until light and smooth, another minute.
Add the almond flour, oat flour, whole-wheat pastry flour, baking soda, baking powder, and salt to the bowl with the butter. Use a fork to lightly mix the dry ingredients together.
Beat the ingredients together until creamy, 1 minute. Add the chocolate chps and beat to combine.
Arrange tablespoon-size balls of dough on baking sheets. Bake until the bottoms are lightly brown and you just start to see a hint of pale brown around the edges, about 10 minutes.